Input mask for a new diagostic sample. Data can be entered manually or can be grabbed from existing sample tracking systems (SQL-Server).
Input mask for a new research sample. Samples can be grouped into projects for better overview.
DNA/RNA extraction and concentration measurement
Select your extraction method und print out labels for standard 1.5ml reaction tube (optional).
Automatic generation of sample sheets and hand-outs for pipetting for qPCR-based methods (e.g. RNAseP oder library-QC). One-click import and calculation of results.
NGS library preparation
Form for library generation. Supports IonXpress- and IonCodeTag-Barcodes. Manage yout library kit lot charges for QM procedures.
Adjust für DNA input amount or PCR cycles. Print out labeles for your library tubes (optional).
Bench side pipetting scheme for library preparation.
Pool creation, sequencing run and data transfer
Select libraries for your sequencing pool and print out the respective pipetting scheme.
Select your IonTorrent sequencing chip and chemistry. The ionLIMS generates a csv-file that can be used within the sample plan chevron of the TorrentSuite software.
Pipetting scheme for library dilution and pool creation.
Overview page of the ionLIMS analysis module.
Analysis view. Variants are grouped into non-synonymous and synonymous/intronic variants. Variant scoring helps in evaluation. Start additional analysis and reporting tools with the icons in the upper panel.
RNA fusion module.
Variants and analysis tools
Detailed view of all variant annotations.
BamCounter module: Allows enhanced bam-file analysis, e.g. for homopolymeric regions. Customizable on request.